Modeling for Vibrio fischeri quorum sensing phenomenon based on Multicompartmental Gillespie algorithm

DOI

10.2991/isca-13.2013.38How to use a DOI?

Keywords

Biological systems; Quorum Sensing; Multicompartmental Gillespie algorithm; Formal Modeling and Analysis

Abstract

Our research purpose is abstracting computational model from the structure and function as well as collaboration among the biolo58gical cells. Quorum sensing P system means bacteria produce specific signaling molecules spontaneously and sense the change in their concentration. In this paper, we use multicompartmental Gillespie algorithm to model and simulate Vibrio fischeri’s quorum sensing phenomenon. We put forward an algorithm considering communication and synchronization of each reaction space in a multi-environment p system, whose effectiveness is verified by simulation tools such as CellDesigner and Scilab. At last we propose an idea of using this P System into Multi-Agent System.

Copyright

© 2013, the Authors. Published by Atlantis Press.

Open Access

This is an open access article distributed under the CC BY-NC license (http://creativecommons.org/licenses/by-nc/4.0/).

Download article (PDF)

TY  - CONF
AU  - Ji Hu
AU  - Xiaoping Wang
AU  - Xiaoping Xue
PY  - 2013/10
DA  - 2013/10
TI  - Modeling for Vibrio fischeri quorum sensing phenomenon based on Multicompartmental Gillespie algorithm
BT  - Proceedings of 2013 International Conference on Information Science and Computer Applications
PB  - Atlantis Press
SP  - 220
EP  - 225
SN  - 1951-6851
UR  - https://doi.org/10.2991/isca-13.2013.38
DO  - 10.2991/isca-13.2013.38
ID  - Hu2013/10
ER  -